rs49138979 SNP Detail

Summary

• ID
  rs49138979
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:29223211 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGATGAGGA TGGTGAGTCT
  AAGGAGGGTT TTCTCGGCTA CCTTTCTGAA AGTCTCTCTC CATGTGACAC AATGTGGAGC
  CTTGCAGACA ATGAAGATAG ACCACTCTTC AAAGGGATTG TACTGTAATG ATCACTGCCT
  ATCTAGAGCC TTCTAACGTG GAGATGAAGC TAGGACTAAG GGAATGACAC ACAAAGCATA
  M
  GCATGGAGAG TCTCTAACTC TAGTGTAGAC ACTATCCTGA CAACCCTACT GGTATGTTTC
  CACACATACT AGGGTATTCC AAAGTGGAAA GCCTTTAAAA GATGGTGGTA GCAAGAAGTC
  ACTGGTGGGT GATAAGGAAA ACAGAGACAG AAAATTCCTA AAGACCAGGG ATTCAAAATT
  CACAGCTATC TGGAAATGTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62195785	NES17191600	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49138979					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62195785	NES17191600	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:29223211 () rs orientation: forward

Symbol	Name	Function Class
Cacna2d3	calcium channel, voltage-dependent, alpha2/delta subunit 3	within coordinates
Tssr127822	transcription start site region 127822	213 bp upstream