rs49140847 SNP Detail

Summary

• ID
  rs49140847
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:41396932 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCCGAAGGCT GCATCCATTA TCAGGCTACA CTGTTGTGAA
  CAGCGTGTCT TAAGAACGAG TACTTTATGA ATGGTTCTTC GTGTCCTGTT TGCAGTAAAT
  M
  CGTGTTGAGA TCCAGGGCTT CAGCAAAGGA GAATGGTGCA GGCGACTAGT TTCTAGAAAA
  GAAAGGAACT TAGCTCCATT CTGGCCTGCT AAATTCTAAT                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52250145	NES15259023	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49140847					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52250145	NES15259023	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:41396932 () rs orientation: forward

Symbol	Name	Function Class
Cd164	CD164 antigen	within coordinates
Cpgi1473	CpG island 1473	735 bp distal
Gm67065	predicted gene, 67065	1523 bp upstream
Rr401849	regulatory region 401849	1697 bp downstream
Rr430366	regulatory region 430366	1534 bp distal
Rr430368	regulatory region 430368	1774 bp distal
Rr430369	regulatory region 430369	1512 bp distal
Tssr93048	transcription start site region 93048	1489 bp downstream
Tssr93049	transcription start site region 93049	1456 bp downstream
Tssr93050	transcription start site region 93050	1420 bp downstream
Tssr93051	transcription start site region 93051	1193 bp downstream
Tssr93052	transcription start site region 93052	1103 bp downstream
Tssr93053	transcription start site region 93053	1077 bp downstream
Tssr93054	transcription start site region 93054	1009 bp downstream
Tssr93055	transcription start site region 93055	975 bp downstream
Tssr93056	transcription start site region 93056	947 bp downstream
Tssr93057	transcription start site region 93057	936 bp downstream
Tssr93058	transcription start site region 93058	402 bp downstream
Tssr97407	transcription start site region 97407	1833 bp upstream
Tssr97408	transcription start site region 97408	1816 bp upstream