rs49140972 SNP Detail

Summary

• ID
  rs49140972
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:66134745 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTATTTGCT ATAATGGATG
  TATCTGATGG CCCCTGAAGA TTATCAAGTG TTACTGATAA TCTTTGGTTA GCAGTGACAC
  ATCAGCACTA AAAAGTGCTG ATACATCTTC TTCTCACCAG GGCAGGGCAG GGCTCAGCCA
  TCGTTCTGTC ATCTATGTCA GAGTAAATAA AACTTGAAGC CGAAATGATC TCATTTTTTT
  W
  AAATCTAAGT CTTAAAAGAG AGGATATGAG TCTATCCTCA GCCGACATTC AGAAACAATC
  AATACAAAAG ATGTATCTCG TGTACTAGCT ATATAGAGAC ACTAATATAA AGTTTACAGT
  GTAAAGATCA AAGACGACAC ACGCTGCCAC CGAGAGGCAA ATTCTATGGG GTAATCCCAA
  CATTTAAAGA ACAACGTCCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss63157235	NES17452210	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T		A	T	T	A		T
ss325658934	CHEV_18_66161328	CHEVERUD	SCREENING_POP	f	SNP											T					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs49140972					SNP	T	T	T	T	T	T	T	T	T	T	T	A	T	T	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63157235	NES17452210	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:66134745 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10156	CpG island 10156	393 bp proximal
Lman1	lectin, mannose-binding, 1	within coordinates
Rr353056	regulatory region 353056	within coordinates
Rr405704	regulatory region 405704	873 bp upstream
Tssr153727	transcription start site region 153727	938 bp downstream