rs49141616 SNP Detail

Summary

• ID
  rs49141616
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:85391169 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGAGTGAGA TTCGCACCCT
  GTGGAGTTAC GGAAAAACAT CTTCGAAACC CTCCTGCACT CACATATGTA GAGGACAAAG
  TACTCAGTTC TTGGGCTGTT CTTTCTTCCC GTCTTCCTGG GGAAACTACC CGTGTACTCA
  GTGTTGGCGG CACGTCCCTT TACCTGCTGA GCCACCTTGC TGGCCTTTTA TTAATTTTTT
  G
  TTTTTGAAAC AAGATATCAC CTTTATAGTT TCAGCTGTCC TGCACTGCTT CTGAGTGTTT
  TTTCTTTCTT TCTCCTTCTT TTCTCCTTTT TTTCTTTTTG TATTTTACCT GCTTGCATGC
  CTGTGCCAGA GGAGGGCATC GGATCTCCGG ACATTGGGTC AGTTATGTGG GCGCTGGGAA
  TCGAACCTGT GTTCTCTGAG                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss145391627	ENSMUSSNP1564813	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
SNP Consensus Information
SNP					Consensus Type	A/J
rs49141616					SNP	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:85391169 () rs orientation: forward

Symbol	Name	Function Class
4930447I22Rik	RIKEN cDNA 4930447I22 gene	within coordinates
Cpgi20702	CpG island 20702	1367 bp distal
Cpgi20703	CpG island 20703	29 bp distal
Cpgi20704	CpG island 20704	307 bp proximal
Gm26664	predicted gene, 26664	within coordinates
Gm50464	predicted gene, 50464	701 bp upstream
Ier2	immediate early response 2	1688 bp upstream
Rr368564	regulatory region 368564	1952 bp downstream
Rr368565	regulatory region 368565	340 bp downstream
Rr368566	regulatory region 368566	313 bp upstream
Rr401023	regulatory region 401023	1483 bp downstream
Tssr2627	transcription start site region 2627	558 bp upstream
Tssr78424	transcription start site region 78424	1534 bp downstream
Tssr78425	transcription start site region 78425	302 bp downstream
Tssr78426	transcription start site region 78426	283 bp downstream
Tssr78427	transcription start site region 78427	within coordinates
Tssr82107	transcription start site region 82107	1681 bp upstream
Tssr82108	transcription start site region 82108	1525 bp upstream
Tssr82109	transcription start site region 82109	1469 bp upstream
Tssr82110	transcription start site region 82110	585 bp upstream