rs49141996 SNP Detail

Summary

• ID
  rs49141996
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:70897825 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGATTTAA GATAGTTGTG
  AAGTCCCAAT CTATGTGCTT AAGGACCCTC TTGCAAGCTG AACATGAAGC ATCAGATCTT
  GTACCCTGTA TTCGAGACAG TCATCAAGAG CAATGATAGA AACTATGGGT GGTTTGTGGC
  CTCAGAACAA AGCCATTGAA CACAAAAGAT GGGGAGAGTG TCAGGACACC ACACAGGGAG
  R
  TAAAGAGGTC ACAAGTACAC CTTGATGTGC CAGAAAGATA TTCACAGGCT TGCTGTATAA
  CAGGCAGGAA TAAAAGGTCA CCACTATCCT GGTATACCAG TGACTTTTCT GTTGCTGTGA
  TAAAACCTCA TGTCTGAAAG TAACTTAAGG GAGGAAGGCT TTACATTATT AGCACAGGGT
  TCCAAAGAGA GAATGCTTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss52652456	NES15473985	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs49141996					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52652456	NES15473985	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:70897825 () rs orientation: forward

Symbol	Name	Function Class
Adamts16	ADAM metallopeptidase with thrombospondin type 1 motif 16	within coordinates
Tssr123156	transcription start site region 123156	376 bp downstream