rs49142196 SNP Detail

Summary

• ID
  rs49142196
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:110014041 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTATCTCTA CATATATGAC
  ATATGTCTGT ATATAGATGT CTCTCTGTCT ATATGTAATT ATCTAGTTCT CTATCTTATA
  TATATGTATA TATATTCTTT CTCTATAAAT AGATAATTTA TGTATATAGA GAGAGCTAGC
  TAGCAAAGTA ATGTTATAAT CATATACGCA AAAAGATAGA CTGGAAAAGA AAATATATAT
  A
  ATTCATTTGT AAACATTAAT AACTCAGGTA CTAGCATATA AAAGTAATGA GGCACAATAT
  GTTGATTCAA AATATAGAAA ATGTCATATA TATGTGTGTA TATATGTATC ATATTGACTA
  AACCTAATCA GACTAATTGA TCCAATCTCA CATTATACTA AGGGCCAGAA TCAATACAAG
  GACACTTTGA CTTATCTGAG                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss135589848	ENSMUSSNP3582452	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs49142196					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:110014041 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ntng1	netrin G1			Intron
				Noncoding-Transcript-Variant