rs49142436 SNP Detail

Summary

• ID
  rs49142436
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:32630360 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACTGTTACTA AGAGCCTTAT AACCCCATCA TGAGTATTGA
  TTTTAGTTGA AGGTTGGATC AGTTACATCA GTAATATCAG AGGTATAAGG GTGAGGCTGC
  R
  GCTTGGTAGT AGAACACGTG ACTGGCTTGT GCAATGCCTG GGTTCCAGTC CTAGCCCTGC
  AAAGCCCGAA GGCATAAGGC AGAGAAGGAG TCAACATAC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss136250221	ENSMUSSNP1650307	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs49142436					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:32630360 () rs orientation: forward

Symbol	Name	Function Class
Ets1	E26 avian leukemia oncogene 1, 5' domain	within coordinates
Rr368708	regulatory region 368708	1616 bp downstream
Rr676237	regulatory region 676237	615 bp distal
Rr676238	regulatory region 676238	572 bp proximal
Tssr88694	transcription start site region 88694	951 bp upstream