rs49142844 SNP Detail

Summary

• ID
  rs49142844
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:24792699 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGCCTAAAT AATACTATGT
  CTATAAGTGA ATATAAACAC GTATGCTTAT GTAAATACAT GCATATATAC ATATATACAT
  AGTGACCAAA AAAAAAAAAA AAAAAAAACA ACCTCTTAAC AGATTTGACC AGTAAAGCAT
  TCCTAGCATA TAAAAGAACA TGGAATAAAC TTACTGTTCC CCAGGGTCTA CGTCTCGCAA
  K
  CCAATGTACA CGATGTCTTT GGCAGATATG CAGGGAGTCA CCCAGGAGAA TCCTGGTACA
  TCTGGGAACT AGAAACAATG GTGTTTCCAT TTAGATAGAT GTGTTTCTCT TTGACAGAAC
  TGCATTTAAT GTTGAGCACA GACAATTAAC ATTTCTTAAC ATCTGTACTT GTGCTTCTCA
  AAAAGACTTA AGCCAGAATT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss61262539	NES16880325	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	T	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs49142844					SNP	G	G	G	G	G	G	T	G	G	G	T	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61262539	NES16880325	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:24792699 () rs orientation: forward

Symbol	Name	Function Class
Arg1	arginase, liver	Coding-Synonymous
Tssr92746	transcription start site region 92746	1164 bp downstream
Tssr92747	transcription start site region 92747	1074 bp downstream
Tssr97085	transcription start site region 97085	1308 bp upstream
Tssr97086	transcription start site region 97086	1246 bp upstream
Tssr97087	transcription start site region 97087	1220 bp upstream
Tssr97088	transcription start site region 97088	1160 bp upstream
Tssr97089	transcription start site region 97089	1145 bp upstream
Tssr97090	transcription start site region 97090	1114 bp upstream
Tssr97091	transcription start site region 97091	719 bp upstream
Tssr97092	transcription start site region 97092	700 bp upstream
Tssr97093	transcription start site region 97093	673 bp upstream
Tssr97094	transcription start site region 97094	662 bp upstream
Tssr97095	transcription start site region 97095	645 bp upstream
Tssr97096	transcription start site region 97096	360 bp upstream
Tssr97097	transcription start site region 97097	113 bp upstream
Tssr97098	transcription start site region 97098	31 bp downstream
Tssr97099	transcription start site region 97099	1146 bp downstream
Tssr97100	transcription start site region 97100	1184 bp downstream