rs49144068 SNP Detail

Summary

• ID
  rs49144068
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:43210302 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGCTTACCTC TGCCTTCCAA GTGCTGGGAT TAAGGTTGTG
  TTCCACCATG CCTGACCTAC AATGTTTTTC AGGGTATCTG TGGTTCAGCC TCCTGATGCA
  Y
  GGGGTGGTTT TATGGTATGG ACAGGGCAAC TTCCTCAGCT GCCCATTAGG TCAGTCTCAT
  GGAGCACAAA GAAGGAGAGG CATACAGTTT CAGCTTCTT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61002049	NES16129044	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T	C	C	T	T	C	T	C	C	T
ss149076612	ENSMUSSNP4494206	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49144068					SNP	T	C	T	T	T	T	T	C	C	T	T	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61002049	NES16129044	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:43210302 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18937	CpG island 18937	1246 bp proximal
Gm44818	predicted gene 44818	441 bp upstream
Rr645990	regulatory region 645990	998 bp proximal
Rr645991	regulatory region 645991	1389 bp proximal
Tssr66014	transcription start site region 66014	1381 bp upstream
Tssr66015	transcription start site region 66015	1413 bp upstream
Tssr66016	transcription start site region 66016	1450 bp upstream
Zfp175	zinc finger protein 175	1378 bp upstream