rs49144178 SNP Detail

Summary

• ID
  rs49144178
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:32427139 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTGAGAGG AAGTATGCTT
  TTCTAGGAAA ACGATTTTCT CTTTATAAGG CTGCCATCAT TTTGGTACAT GGAAAACTGA
  TTCATGGTCA CCGTTTTTAT TTTTGCCATC AGCCTACTGT GTAGAGTGTG CACTTTAGTA
  TAGGAAAGCA AGTTTCTCTC TTTTATTCTT TTTTTTTTTT TAGCTTTTAT TAAAACTAAA
  Y
  AAAATGTTAT ATGGTTCAAA CAAAATATTA TCCGTGTCCA GTACAGGACA GATTAAAATT
  TCCTAGTTGT GGGTGAGAAG TACGATCAGG GGTATACAGC TATGTCTTTT GGTCATGCCA
  CTGAACATGC ATAAAGCATT TCTATTTAGT TAGCACAACA CAGTGTGGAA GAACCAGCAG
  TGAAATATAA AGATCTCTAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss52371646	NES15392166	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	C	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs49144178					SNP	T	T	T	C	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52371646	NES15392166	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:32427139 () rs orientation: forward

Symbol	Name	Function Class
Ccdc71l	coiled-coil domain containing 71 like	1649 bp upstream
Cpgi4541	CpG island 4541	1292 bp proximal
Rr403262	regulatory region 403262	1319 bp upstream
Tssr113128	transcription start site region 113128	1552 bp upstream
Tssr113129	transcription start site region 113129	1624 bp upstream
Tssr113130	transcription start site region 113130	1732 bp upstream
Tssr113131	transcription start site region 113131	1771 bp upstream
Tssr113132	transcription start site region 113132	1930 bp upstream
Tssr113133	transcription start site region 113133	1991 bp upstream