rs49145115 SNP Detail

Summary

• ID
  rs49145115
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:97148248 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAGTACCA AGACAGATGG
  CTGAGTGCCG TCTTGGGCTC TAAAGTGGGA CAGATGGATG GTCCTTTGGT CTCTCCGCGT
  GGTATTTTCT ATTGGTATTT TTGACCGTTT GATGATGATG ACTCCAGTGG ATAGTAGGAA
  GTGGCTTCAG GGTATGATCT GATTTTGAAT CTGGTGGGCT GAGATGGGCG TGGCCGTGGT
  K
  CACCTTCCTG GCTTTGGAAG GCTCTCCCGT CTGGAGGGTG TGATTGAGAT GAGGTCTCGG
  GTTCTAGCTC TGTGGTTTCC AATTTCTCAG GTTGTATTTT AAAATCTTGA AGAGTTAGAG
  ATCAAGGGCA AGGCATGATT ATAGCAGTGG TGTATTCGAT TGCTCTAGGG GAGCAGAACT
  CATACAGTGA ATCTGTATAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss63609784	NES17041998	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T		T	T		G
ss325076422	CHEV_15_97080798	CHEVERUD	SCREENING_POP	f	SNP											T			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs49145115					SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63609784	NES17041998	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:97148248 () rs orientation: forward

Symbol	Name	Function Class
Gm57814	predicted gene, 57814	1205 bp upstream
Pced1b	PC-esterase domain containing 1B	within coordinates
Rr305670	regulatory region 305670	848 bp distal
Rr308785	regulatory region 308785	448 bp distal
Rr308786	regulatory region 308786	1153 bp proximal
Rr312356	regulatory region 312356	1447 bp distal