rs49145664 SNP Detail

Summary

• ID
  rs49145664
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:91633127 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTATCTGAT CTCCTCGAAA
  TAGAACTATG GGCAATGGCA AGCAGCAGTC AATGTCCCTA GCCAGTGAGC CATCTTTCCA
  GTACCTCCTG CCCCCTTGAA ACAAGGTCTC ATTATGTAGC CCAGGCTAGC TGTAAACTGG
  AGAGTCTCCT ACCTTAGCCT CCAAGTGCTG AGAGCACAGG CGAGCATCCA AACAGGAAGC
  Y
  GGATGCCTTT TCAGCTTGAG AATACGTTTC TAACCTTAAT AATCAGTACG AGATGATAAA
  CCAGGATGTG ATGGGGCATG GTGCATGCCT TTAATTCCAG AACTATGGAG ACAGAGCCAA
  GTGGATCTCT GAGTTCCAGT CTAGCCTGGT CTACAGAGCG AGTCCCAGAA TAGCCAGGGC
  TATATAGAGA AATCATGTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss61672051	NES17617442	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs49145664					SNP	T	T	T	T	T	T	C	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61672051	NES17617442	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:91633127 () rs orientation: forward

Symbol	Name	Function Class
Gm51993	predicted gene, 51993	within coordinates
Gm59627	predicted gene, 59627	within coordinates
Rr470642	regulatory region 470642	1296 bp proximal
Rr470643	regulatory region 470643	1525 bp proximal
Rr470644	regulatory region 470644	1936 bp proximal
Ston2	stonin 2	within coordinates
Tssr114594	transcription start site region 114594	649 bp upstream