rs49145901 SNP Detail

Summary

• ID
  rs49145901
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:130134210 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAGGCCAAG CCACACCAAA
  AATATTTAAC CATTTTTTAA CCCACGAAAG GGAAAAAAAT TTCATCTCGG GACAACCTAT
  CTGTTGGCTT GGCCAGCTAA CTTTACAACT AAAGAGACAT AAAAAACACT ATGTTATCTA
  TCAGGCACTA ACATCCTATG TAAAACCTTC ATTGGGACAG GACTAGGAAA AAAGAGGACC
  Y
  CACTCCTAAC ACACACTCCC AGAGACAATA AAAACGATCA CGTTGTGACT ATGGCAGTGG
  ATTTCCTTTA ATCAAAGACA ACCATGACAG ATCCAATAAC TATCAAAAGC TACATTTTAC
  CAAAAACAAA TCTTCATCTT TAAAAACATT TAATCATACA TATATACAAT ACATGCTGCT
  GCCCTTTCAG GGTTTCACTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61062478	NES16062245	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49145901					SNP	C	C	C	C	C	C	T	C	C	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61062478	NES16062245	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:130134210 () rs orientation: forward

Symbol	Name	Function Class
Gm57247	predicted gene, 57247	1037 bp downstream
Nsmce4a	NSE4 homolog A, SMC5-SMC6 complex component	46 bp downstream
Rr153983	regulatory region 153983	1610 bp distal
Rr153984	regulatory region 153984	1010 bp distal
Rr153985	regulatory region 153985	791 bp proximal
Rr169359	regulatory region 169359	410 bp distal
Rr169360	regulatory region 169360	725 bp proximal
Rr381489	regulatory region 381489	275 bp downstream
Tssr69470	transcription start site region 69470	1167 bp downstream