rs49146008 SNP Detail

Summary

• ID
  rs49146008
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:81332366 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTCAGCTCG GCATGGGCGG
  CTGCTGAGGT CCTTCGGGGA GAGCCACGAA CAGCCCGCGC CTGCCCTAGG GTCCTTCGGG
  CAGCACTGCG GACGGCCCTG TCTGCCGCGC CGCCTTCTGG GAAATGTAGT CTTTCTTGTG
  AGCGAGCCTC GTTTTAAACG GCTCCGCGCG CTGTGGAACC CTGGGAGTTG TAGGCACACT
  K
  AGACTCGCAC TAGGGCCTCT CGGAAGCTGT GACAGTCCTT ATGCGCGGAG CCCCCTGGAA
  GTTGTAGTCC CACTGTGCCG CTCCTAGAAG CTATGGTGGA CAATCTACTG CTACTGAACT
  CATCCAAGCC GCAAAACACA GATGACTTAC AAAGCTATTA AAAACCATTC CCAGTAAATC
  TTGTTTAAGC CCCATGTTTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61292414	NES16908883	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49146008					SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61292414	NES16908883	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:81332366 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1993	CpG island 1993	within coordinates
Cpgi1994	CpG island 1994	1988 bp proximal
Ncln	nicalin	140 bp upstream
Rr402085	regulatory region 402085	within coordinates
Rr435684	regulatory region 435684	217 bp distal
Rr435686	regulatory region 435686	within coordinates
Rr435687	regulatory region 435687	76 bp distal
S1pr4	sphingosine-1-phosphate receptor 4	1215 bp downstream
Tssr98629	transcription start site region 98629	208 bp upstream
Tssr98630	transcription start site region 98630	145 bp upstream