rs49146012 SNP Detail

Summary

• ID
  rs49146012
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:28683996 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCAACTACTT TAAGTACAAA AATACCCATG TCGCCACCTT
  CACAACAGCC CACCACTCAG CACAAATTGC CAGCAGCATT CCTCTTTCCC ATCAGCCCTA
  Y
  TTCATTCACC CTGCACACTG CACCAAAGCC AATCCTGAAC TCAAGCACTG TCCCATACCA
  GCCCCTCCAG CCTGCTACTC CCAGACCAGC AGACTTCCC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss52348267	NES15378184	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	C	C	C	T	C	T		C	T	T	C		C
ss137502159	ENSMUSSNP2970401	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C						T
ss323971706	CHEV_12_29318862	CHEVERUD	SCREENING_POP	f	SNP												T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs49146012					SNP	T	T	C	C	C	C	C	C	T	C	T	T	C	T	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52348267	NES15378184	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:28683996 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4510	CpG island 4510	1268 bp proximal
Rps7	ribosomal protein S7	within coordinates
Rr265285	regulatory region 265285	4 bp proximal
Rr369505	regulatory region 369505	1800 bp upstream
Tssr116014	transcription start site region 116014	1236 bp downstream
Tssr116015	transcription start site region 116015	1835 bp downstream
Tssr116016	transcription start site region 116016	1846 bp downstream
Tssr116017	transcription start site region 116017	1870 bp downstream
Tssr116018	transcription start site region 116018	1894 bp downstream
Tssr116019	transcription start site region 116019	1917 bp downstream