rs49146580 SNP Detail

Summary

• ID
  rs49146580
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:54042393 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAATA GATTCACCAT AGAGGTCAAA
  Y
  AACACGGCGG GGGTCGGGGA AGCTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss139548764	ENSMUSSNP6019007	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss324632376	CHEV_14_54424611	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs49146580					SNP	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:54042393 () rs orientation: forward

Symbol	Name	Function Class
A430107P09Rik	RIKEN cDNA A430107P09 gene	within coordinates
A630038E17Rik	RIKEN cDNA A630038E17 gene	within coordinates
Rr492107	regulatory region 492107	983 bp distal
Rr492108	regulatory region 492108	264 bp distal
Rr492109	regulatory region 492109	493 bp distal
Rr492110	regulatory region 492110	1248 bp proximal
Rr492111	regulatory region 492111	1462 bp proximal
Tcra	T cell receptor alpha chain	within coordinates
Trav17	T cell receptor alpha variable 17	1703 bp upstream
Tssr125501	transcription start site region 125501	1527 bp upstream
Tssr125502	transcription start site region 125502	1561 bp upstream