rs49146871 SNP Detail

Summary

• ID
  rs49146871
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:74606027 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGTCCATC ATATCCAGAG
  TCCCAGGCCA TCTGCCCCAG CATCCGAGAT CTCCCCTCTT CTCCTGCTGA AAGGCTTGCA
  CTAGCAAACA CACCAGTATC CTGAGGCTCT CCGCTGGCAC CTAGGGCTTT GGTGCCGGCT
  TCTGCCCGCC TGGCCGGTCC CGGCTCAGCG TTCTCCTTCT CTGAAACTCC CCCATGAGAA
  W
  CTCTCTCTGA GAATAGTCCT GGGGCCCGCT CCCGTGCTCC CCCATGCTCA CCAAGCTCCC
  CGAAGGTGCC CAATATCAGT GCCAACAGCA CCATCCAGGT CCCCTGCATG GTCGAGGTCC
  TCACTCAGGC CTGCCTGGTG GGGAAATGCC TACAGCGGTG GTCTGACCGG TTGGCTAAGC
  AGATTAGAGG AGGATCAGAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss148149812	ENSMUSSNP7046896	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs49146871					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:74606027 () rs orientation: forward

Symbol	Name	Function Class
Gm33124	predicted gene, 33124	703 bp upstream
Lypd2	Ly6/Plaur domain containing 2	within coordinates
Tssr134735	transcription start site region 134735	114 bp downstream
Tssr134736	transcription start site region 134736	136 bp downstream
Tssr134737	transcription start site region 134737	180 bp downstream
Tssr134738	transcription start site region 134738	582 bp downstream