rs49147074 SNP Detail

Summary

• ID
  rs49147074
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:17462155 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGCTAGCTT TATAAACTAT
  TAATATCTTC TGGTTTATGG TTAACATATC AAAAACATAA TTTTAAAGCC ATTTTTTAAA
  ACTGAACTGA AATTTGTCCT TGAGTAGAAA GCAGGGAAAA ATTCTATTCT AAAAAAACTT
  ATAATAGAAT GCTTGCATGT ATAATCCACT TTTCAGTTTG TTTGTACTGC CTTTTCTGAG
  Y
  CTTTATACAA CTTTAATTGT TTTTGTTGTT GCTGTTGTTC TGTTTTTCTA TTTTTAATCA
  TAGCACTCAA ACTTGGAAAA CCTGTTAAGG CAACTACATG GGATGTTTAA AAAAAAAAAT
  CCAGTTAACA TATTGCTATG GAAACCAGGA AATAGAAACA GCACGCTAAT CATTCATTTA
  GACAACTACG GTGTGTGTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss133014945	ENSMUSSNP2709210	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs49147074					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17462155 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17176	CpG island 17176	1159 bp proximal
Met	met proto-oncogene	1644 bp upstream
Rr626799	regulatory region 626799	1154 bp proximal
Rr626800	regulatory region 626800	1318 bp proximal
Rr626801	regulatory region 626801	1361 bp proximal
Rr626802	regulatory region 626802	1893 bp proximal
Tssr55050	transcription start site region 55050	1276 bp upstream
Tssr55051	transcription start site region 55051	1399 bp upstream
Tssr55052	transcription start site region 55052	1593 bp upstream
Tssr55053	transcription start site region 55053	1670 bp upstream
Tssr55054	transcription start site region 55054	1729 bp upstream
Tssr55055	transcription start site region 55055	1745 bp upstream
Tssr55056	transcription start site region 55056	1771 bp upstream
Tssr55057	transcription start site region 55057	1936 bp upstream
Tssr55058	transcription start site region 55058	1976 bp upstream