rs49147299 SNP Detail

Summary

• ID
  rs49147299
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:84586793 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATAGGCTTC ACGGGGGAGA
  AAAATAAGAC ACGGATCTAT GACTGACAAG GGGTCATTCA CAGGTCAGAC AGCTTACAGA
  TTTGAACCTG GGCAGCCGAG GTCCCACGGT CTGTTCAGGC CAAGGCTGGG AATGTTAAAA
  GTTCTCCAGC TAAGGCAGGG AGCTCATACC CCTCCTTAGC AGGCAGGCTG GGAGTGGCCA
  S
  TGAGCCTTTT ATTGGGTGTC CCTTTTGTGG ATTAGATGCT TGACCAGAAG GTGGGACTTG
  GATGCTCAGA GGACACGTGG GCTGGCACCC ACCATCTTAG TGTATGACTG TGTCTGTTCC
  TGCAGAGAAA CGATTCCTAC GCCGCTCCCG CTCTGGGGAT ATCCTAGCCA AGAACCCAGT
  GGTGCGCTCC AAAAGCTACA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148254555	ENSMUSSNP845234	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C	G
ss325039419	CHEV_15_84533022	CHEVERUD	SCREENING_POP	f	SNP				G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49147299					SNP	G	C	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:84586793 () rs orientation: forward

Symbol	Name	Function Class
Prr5	proline rich 5 (renal)	within coordinates
Rr304869	regulatory region 304869	1593 bp distal
Rr304870	regulatory region 304870	193 bp distal
Rr304871	regulatory region 304871	1008 bp proximal
Rr314876	regulatory region 314876	1737 bp distal
Rr314877	regulatory region 314877	within coordinates
Rr404546	regulatory region 404546	251 bp downstream