rs49147320 SNP Detail

Summary

• ID
  rs49147320
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127762770 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGACATAC CGGAAGCAGA
  GAGGTCTTGC ACCGACTTTC TCCCGTGCCA CCTCAGTTCC CCTTGGGTTC CTACCCCATG
  CTGGGGCGCT GCTCACATTT GCGCTGGGGC TTCCCCACTC GTGCGAATTC CACCTGGAAA
  TTCCCTCACG GACACACCCA GAGTCTGTGC CGCACCGGCC TCCCAGGGAT TCTAAATGCA
  R
  TCAAGCTGGC AGTGAAGACG ATCCACCACA CATTTAGGAT CAAGTTATTT CTGTGCCGAA
  CGCAGGCAGA TTTTTAAGAT CTTGTCATTA TCTTTTTAAT CATACCAGTA TGAAAACCAT
  TTACAGGAGT TTATGTTAGG TGTTGTAACG GACCCAGAGA TGGTTTAAAT ATACACAGAC
  ATGGCTTTTA CCTGTAGCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss135876644	ENSMUSSNP3364464	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
ss320958786	CHEV_3_127672039	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs49147320					SNP	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127762770 () rs orientation: forward

Symbol	Name	Function Class
Gm35667	predicted gene, 35667	1800 bp upstream
Gm65460	predicted gene, 65460	2 bp upstream
Rr52	regulatory region 52	860 bp proximal
Rr584913	regulatory region 584913	1853 bp proximal
Rr584914	regulatory region 584914	1953 bp proximal