rs49147616 SNP Detail

Summary

• ID
  rs49147616
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:147166416 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAAAT TTCATCTGAC TCTCTAGGAG
  R
  CTAGTGTCAC TCAAAGACCT TTGTC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	LG/J	SM/J
ss134013077	ENSMUSSNP5195970	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss322086695	CHEV_6_147213440	CHEVERUD	SCREENING_POP	f	SNP		G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	LG/J	SM/J
rs49147616					SNP	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:147166416 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18178	CpG island 18178	366 bp distal
D6Mit26	DNA segment, Chr 6, Massachusetts Institute of Technology 26	47 bp distal
Pthlh	parathyroid hormone-like peptide	905 bp upstream
Rr145960	regulatory region 145960	415 bp distal
Tssr59618	transcription start site region 59618	815 bp downstream
Tssr64140	transcription start site region 64140	1044 bp upstream
Tssr64141	transcription start site region 64141	978 bp upstream
Tssr64142	transcription start site region 64142	941 bp upstream
Tssr64143	transcription start site region 64143	890 bp upstream
Tssr64144	transcription start site region 64144	766 bp upstream