rs49147628 SNP Detail

Summary

• ID
  rs49147628
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:107196307 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCAGCATA AGAAATACAG
  GGAGGGAGTG AGCAGAGGCG AACTTGAGCA ATAAAAAACC CACATCCCAC AGCCTACCCA
  CATCAGAAAG CCTCCACGTG ATTCCAAGCA GCAGAACCAC ACAGGAGAAG GCAGGCAGCC
  TCTTCTGATA TTGAGTAGCA ATTGCAGCAT GTTGCTTGTG TAACACAGAG ACCAAAACTT
  Y
  GGCTGAGCAA GAAAGTGAGG TGAAGTTTCC ATCAATTCCC AGTTCAAAGA CCTGTGGAAT
  TTGGGAATCA CCAACTCTGC TGTTAATTGG ATGTTGCTTC TTATTTTAAA TTAATAGTCC
  ATCTGTTGCT ATAAAATAAT TGAATTATAT GACATCTCAC CCCTTCCACG TTTCCTATGT
  ACTTCCGTGA CGTTTCAACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52693958	NES15535370	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49147628					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52693958	NES15535370	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:107196307 () rs orientation: forward

Symbol	Name	Function Class
Rr278131	regulatory region 278131	within coordinates
Rr389032	regulatory region 389032	784 bp downstream