rs49147781 SNP Detail

Summary

• ID
  rs49147781
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:30222583 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGAAT GGATGTCAGC GGAAACAAAC
  K
  CAGAGAATGC CCAAACTGAT ATAAA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss145438782	ENSMUSSNP2144532	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs49147781					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:30222583 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8934	CpG island 8934	491 bp proximal
Gm50019	predicted gene, 50019	within coordinates
Rr525144	regulatory region 525144	209 bp proximal
Rr525145	regulatory region 525145	627 bp proximal
Rr525146	regulatory region 525146	1159 bp proximal
Rr525147	regulatory region 525147	1466 bp proximal
Tssr143600	transcription start site region 143600	747 bp upstream
Tssr143601	transcription start site region 143601	871 bp upstream
Tssr143602	transcription start site region 143602	1169 bp upstream
Tssr143603	transcription start site region 143603	1244 bp upstream
Tssr143604	transcription start site region 143604	1420 bp upstream
Tssr147242	transcription start site region 147242	1011 bp downstream
Zfand3	zinc finger, AN1-type domain 3	1430 bp upstream