rs49148356 SNP Detail

Summary

• ID
  rs49148356
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164792153 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGCT ACTCGCCCTC TCCCTGGGTC
  Y
  GGTCCCCTCT GTGAAATGAG ACGCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148233580	ENSMUSSNP2214428	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
ss320607193	CHEV_2_164775733	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49148356					SNP	T	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164792153 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12679	CpG island 12679	within coordinates
Cpgi12680	CpG island 12680	552 bp proximal
Mmp9	matrix metallopeptidase 9	within coordinates
Rr569776	regulatory region 569776	1706 bp proximal
Tssr21690	transcription start site region 21690	1988 bp downstream
Tssr21691	transcription start site region 21691	917 bp upstream
Tssr21692	transcription start site region 21692	977 bp upstream