rs49148380 SNP Detail

Summary

• ID
  rs49148380
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:14620958 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGTTAGGAT GACTTCAAAA
  GGGTATCCGG GCTCAACATG TTCCTCTGAG TGGGGTGGCT GTCTGCACAG GACAGAGGGC
  TGTTGGGAAT CATGAACTCA GAAATGGGTT CGGAGGCAGA GCATTGCAGG TGTTGAGCTG
  TAAGGAGGGG ATGTTCATGG GATGTCAGGA GACGACTAAG CAACTCTGGA ATCAGCTACC
  Y
  GGTCCTGGAA AGGAGTGGGC AGGAGTACAG TTAAGGGAAG TAGAGTCTAG CTTTCCTTGC
  TGCCTGTTAG AATTCTGATG AGTTGCTATG GTTGGAGGTA GAGTCTGGGA TTAGGAGACA
  GGAACATCTG GGATAGTGGC CTGTGTGTAC TTATGAGCCA GCAGGAAACT GGAAACGGGT
  ATCTAATACT CCCATGGAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60541454	NES16554290	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49148380					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60541454	NES16554290	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:14620958 () rs orientation: forward

Symbol	Name	Function Class
4930474M22Rik	RIKEN cDNA 4930474M22 gene	1754 bp upstream
Rr522524	regulatory region 522524	1723 bp distal
Rr522525	regulatory region 522525	334 bp proximal
Smoc2	SPARC related modular calcium binding 2	within coordinates
Tssr5014	transcription start site region 5014	1744 bp upstream
Tssr142738	transcription start site region 142738	1660 bp downstream
Tssr142739	transcription start site region 142739	1450 bp downstream
Tssr142740	transcription start site region 142740	1424 bp downstream
Tssr146495	transcription start site region 146495	1755 bp upstream