rs49149900 SNP Detail

Summary

• ID
  rs49149900
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:93612787 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTCAAAGTC AGGTAGAGAG
  TAAAGTCAAG TTCAAAATGA AAAACCAATA AAACAAAAAG AAAGAAAGAA CAGAAAAGAA
  GAAAGAAAAA GGTGACAGAC AAAAAACTAG AAAGCTAGTT CTGAAATTTA ATTTTTTTAG
  GTAGAAAAAA ATATAACAAA ACATAATTTT CAATCAAGTA ACTAAAGTGT AGTTGACATT
  R
  AAATGGATAG AATAGAAAAT ACTATAAAAC ATTTTTTTTA AAGAAAAGGT GGGGTGGGGA
  GAGGCCATCT TCACATAAAA TGGAGATGAA GAGAGTCTAG CTCTAAGGAG GCTATGTTAG
  GCAGTGCTGT GTTGTAAATT CCCGAACTGT AGGCTTCAGT TCCCTTAAGT AGCACATTGA
  AGCTGGTAGT GACCATGGCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145617871	ENSMUSSNP4739307	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
ss322805325	CHEV_8_95410058	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49149900					SNP	G	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:93612787 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Lpcat2	lysophosphatidylcholine acyltransferase 2			Intron
				Noncoding-Transcript-Variant
Tssr78766	transcription start site region 78766			280 bp downstream
Tssr78767	transcription start site region 78767			1241 bp upstream
Tssr78768	transcription start site region 78768			1290 bp upstream