rs49150487 SNP Detail

Summary

• ID
  rs49150487
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:88188277 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A CAAAGCCTAC CCTTCCCCTT TCTCAGAGAC CCGAGATTAT
  CAGTGTTTGG GCCACTGGAT CAGGAGTCTA GTGGGGCCCG CCCGGAACAG TTTGGTGGGG
  C
  AACCAAAAGG GTAATTAGTC CCATGGCTAG AAATCTGGAA GGGGAAGAAA AGAGAGCAAG
  GACAACTTTC TCATCCTTGG GTTGCTACTG AGGCCAGGGC A                    
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss144898961	ENSMUSSNP1726352	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs49150487					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:88188277 () rs orientation: forward

Symbol	Name	Function Class
Hjurp	Holliday junction recognition protein	1916 bp downstream
Mroh2a	maestro heat-like repeat family member 2A	within coordinates
Rr18061	regulatory region 18061	1277 bp distal
Rr18062	regulatory region 18062	1324 bp proximal
Rr35066	regulatory region 35066	within coordinates
Tssr7958	transcription start site region 7958	1430 bp downstream
Tssr7959	transcription start site region 7959	1410 bp downstream
Tssr7960	transcription start site region 7960	1387 bp downstream
Tssr7961	transcription start site region 7961	1358 bp downstream
Tssr7962	transcription start site region 7962	1198 bp downstream
Tssr7963	transcription start site region 7963	1168 bp downstream
Tssr7964	transcription start site region 7964	1141 bp downstream
Tssr7965	transcription start site region 7965	1117 bp downstream