rs49150559 SNP Detail

Summary

• ID
  rs49150559
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:80178789 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTATTCGAGG GAGGGTGGGA
  CGCTCTGTCA GAGGCCAATC AGGGGAAGCC CAATCAACAA GAGCCTTGGC TCCCAGGAGC
  CAAACTTGTT AAAGGGACAC CCCTCTCCAC TGTGTTTCTC AAGCGCTGGT GGTGAGTCAG
  AATGGGACAG TCACCGGCGT CGCGGAACAC GCGCTGCACG AACAGGCAAG AGTCGTTAGC
  R
  CCACCACAGA GGCCGCAGCG GTCCTCGAGG GTGCCGGAGC CCAGTATCCC GTCACAGCCT
  GCGCTCTGCG GGGGAGGGGG GGGGACGGGG GGGGGGACGG GACACTGGGT CAGAATCAGC
  GGGGCATGAG AGGGCGGGGC TGTGGGAGGG GCGGGACTAA GGAACAAGGT TTGATAGGTG
  GGCGAGACTG AAGGAATTAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ
ss61291165	NES16900981	PERLEGEN	MM_PANEL2	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ
rs49150559					SNP	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61291165	NES16900981	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:80178789 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Adamtsl5	ADAMTS-like 5			Coding-Synonymous
				Noncoding-Transcript-Variant
Cpgi1873	CpG island 1873			within coordinates
Rr435198	regulatory region 435198			1201 bp distal