rs49151320 SNP Detail

Summary

• ID
  rs49151320
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:53767843 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATAGTAGT ATCTACCAGA
  TGCTATTGTA AATTATATGA TAGAAACAAA GCAGTTTTCC TTTTTTAAAG GAACTGGTGG
  TCTGCTAGAA AACAACAGCT CTATGCAATA ATTGTCTAGT CTTTCAGAGT ATCACAGTGG
  CAAATACAGA GGACAGTGAA GGTCCAAATT AAGGTGGAGA CTAAGAAAGT CTGTAGAGAA
  Y
  GGAACTCTTA GGCTCAGTTT TGATGGGTGG ATAAAAATGT CACAAGAGCT AGAGATTTCT
  AAATATAAGA AAGAGACAAA GGTACAGAGG CATGAAAGGA TCCACATGCT GAGAGCTGAT
  GTGCAATTTG GGTAATGTTG AGACTTTTAT GGTGGTGGTA ATGAATGTGT GTGTGTGTGT
  GTGTGTGTGT GTGTGTGTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss137758521	ENSMUSSNP4280124	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49151320					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:53767843 () rs orientation: forward

Symbol	Name	Function Class
Npas3	neuronal PAS domain protein 3	within coordinates
Rr256685	regulatory region 256685	843 bp distal
Rr263732	regulatory region 263732	707 bp distal