rs49151967 SNP Detail

Summary

• ID
  rs49151967
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:7354344 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACATATATA TGAATGAACA
  CTTACATACA CATACACAGA CACACACACA GACACACACA CACACACACA CACACACACA
  CACACACATA AACACACACA TGCTGGTCTG GAGTTAAGGC TTTGAAAAGC TCCTGTGTAG
  ACTTCCTTGA GGACATGGAG AATTTCAGAA TGTCTCCACG TTTCTGTCTT GGAGCAGAAA
  W
  GGAGACAGGT GTTGGTTTAG GGGAGGACAG TGGTGAGGTT AATGAGCGGA GGTAAGACAT
  ATGATCCCAT ATTGAGATTA TGAAACAGTA ACTTCTTCCA CTTACAAACC AGGTAACCAG
  TTATGACACC AGACTTGAAC TGTAGATCCA CGAGGCTCAG ACTTTGGGTA TTTCTTTTTT
  CAGGTTTCCT GGTGAAGTCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60680456	NES16229701	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49151967					SNP	T	T	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60680456	NES16229701	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:7354344 () rs orientation: forward

Symbol	Name	Function Class
Mmp12	matrix metallopeptidase 12	within coordinates
Tssr2759	transcription start site region 2759	798 bp downstream
Tssr83713	transcription start site region 83713	1958 bp downstream
Tssr83714	transcription start site region 83714	1774 bp downstream
Tssr83715	transcription start site region 83715	1730 bp downstream
Tssr83716	transcription start site region 83716	1437 bp downstream
Tssr83717	transcription start site region 83717	1426 bp downstream
Tssr83718	transcription start site region 83718	1392 bp downstream
Tssr83719	transcription start site region 83719	1359 bp downstream
Tssr83720	transcription start site region 83720	1326 bp downstream
Tssr83721	transcription start site region 83721	1095 bp downstream
Tssr83722	transcription start site region 83722	814 bp downstream
Tssr83723	transcription start site region 83723	767 bp downstream
Tssr83724	transcription start site region 83724	448 bp downstream
Tssr83725	transcription start site region 83725	311 bp downstream
Tssr83726	transcription start site region 83726	216 bp downstream
Tssr83727	transcription start site region 83727	366 bp upstream
Tssr83728	transcription start site region 83728	458 bp upstream
Tssr83729	transcription start site region 83729	480 bp upstream
Tssr83730	transcription start site region 83730	960 bp upstream
Tssr83731	transcription start site region 83731	974 bp upstream
Tssr83732	transcription start site region 83732	1015 bp upstream
Tssr83733	transcription start site region 83733	1052 bp upstream
Tssr83734	transcription start site region 83734	1480 bp upstream
Tssr83735	transcription start site region 83735	1502 bp upstream
Tssr88067	transcription start site region 88067	1331 bp upstream
Tssr88068	transcription start site region 88068	1285 bp upstream
Tssr88069	transcription start site region 88069	839 bp upstream
Tssr88070	transcription start site region 88070	407 bp downstream
Tssr88071	transcription start site region 88071	1071 bp downstream