rs49152750 SNP Detail

Summary

• ID
  rs49152750
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:127700879 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAGACCTTAC TTTATAAAAT CCTAAACAAT TTTTTTCTTA
  GCTTCTCTTG CACTCATTTG TTAGACTGTT GGCCTAGTAT GCCTAAGGCC CTCTGCTCCA
  R
  CACTTCAACC AAGATGCGGC ACACCAGCCT ATAATCCCTG CACTTTGTTT CTGGACAACC
  TGAGTTACAG CGTTCTGCTT CTCCCCAACC ATCCCCCAAT                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60798958	NES16471977	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49152750					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60798958	NES16471977	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:127700879 () rs orientation: forward

Symbol	Name	Function Class
2900009J06Rik	RIKEN cDNA 2900009J06 gene	within coordinates
Ccnt2	cyclin T2	1022 bp upstream
Cpgi690	CpG island 690	687 bp proximal
Rr396250	regulatory region 396250	699 bp upstream
Rr417683	regulatory region 417683	within coordinates
Rr417684	regulatory region 417684	713 bp proximal
Rr417685	regulatory region 417685	1722 bp proximal
Tssr8489	transcription start site region 8489	1041 bp upstream
Tssr8490	transcription start site region 8490	1099 bp upstream