rs49152979 SNP Detail

Summary

• ID
  rs49152979
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:81484904 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGAAGATGCT CCTGTCACTC AGGCCTCATT AGCCAATCAG
  AGTCTCGAGG CAGCTGAGTG GAGGCGGGAA CTTCCGGTCC GCCATTCTCA GGTTTGACTG
  Y
  GAGTCTGAGG GAAGCTCTAG TGTGTCCCGT GCTTTGAGCT GTGACCGGCT ACTAGGAGCT
  GTGAGGAGAG CGGGCGAGCT GGGGATCCGC GCCATGGTGA                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61292110	NES16906353	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49152979					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61292110	NES16906353	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:81484904 () rs orientation: forward

Symbol	Name	Function Class
Ankrd24	ankyrin repeat domain 24	1460 bp downstream
Cpgi2012	CpG island 2012	14 bp distal
Gm10778	predicted gene 10778	within coordinates
Rr402093	regulatory region 402093	within coordinates
Rr435748	regulatory region 435748	1 bp distal
Rr435749	regulatory region 435749	within coordinates
Rr435750	regulatory region 435750	1137 bp proximal
Tssr94807	transcription start site region 94807	30 bp downstream