rs49153817 SNP Detail

Summary

• ID
  rs49153817
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:67002119 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAGAAGCTC TCGTGTGTCA
  TTGGATGTTC TGTTTTGCCA AGAAAGTCTT GTTCCCTGTT TTTAAGCTCT TAGAACAATC
  CCATTTTAGG ATATCTTCTA TCTGGGCTGG CTTTTCAACA GTTCGCAACA CGTGCTTTTT
  TAAAAGATGA CTTATCCTCA AGTTTCCACA TTGGGCGCCT CTCTGGGTCT CCTTTTGGAA
  Y
  GTCCTTGTAT CGCTATCCGA TGTCCCTTCT CGTTCAGTTG AGAAGGCAGC AGTCCTCATG
  TCTACTAAGG TATTAACCAC AATGATGCCA ATGGTCAACT GCAAGGAAAG CTCTGGGGTG
  TTGGAATTCT TCTGTATCCT GTCTTGTGAT GGGTTTCACG AGAGTCTAAA GGGAGGAGGA
  AATGAGAGAG AGCAATGGCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62440205	NES17246769	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49153817					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62440205	NES17246769	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:67002119 () rs orientation: forward

Symbol	Name	Function Class
Adra1a	adrenergic receptor, alpha 1a	within coordinates
Gm62844	predicted gene, 62844	within coordinates
Rr293226	regulatory region 293226	119 bp distal
Rr389792	regulatory region 389792	939 bp downstream