rs49154533 SNP Detail

Summary

• ID
  rs49154533
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:47010504 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAAGTGAGG CTGCACAGCA
  CAGCACCCTG AGTCCAGACT CCCAGTAGTG CTCTCTGCCT ACGTGGTTCC TGGCAATCCC
  TGTGGTAAAA GTCACCATCC CTGTGAGTGC TCACCCTGAG GGGCTGTCAA AAAGAGGGTG
  TTCCCCCTGG ATCCTGAAAA GCATTAAGGG CACAGCCCTG TTGTTTGAAA ACCGCATCCC
  Y
  GTTCATTTTC ATATGTGCAC TTTACAGAAA CACCAACAGA TGTGCTAGCT CTCCCCTTGC
  CAGATTCCTG GGAGATGCAA GACTCAAGAA ACGTTGTGCT TGGAGTCTAT GGGGAGCCAG
  AGAAGTCCCA AGCCTAGCGT TTCCCAGGAA GCAAGGGCAA TAGCAAAGGC AGGAGGGAAA
  GTCACAGTGA ACTTACTGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss146270543	ENSMUSSNP5874172	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs49154533					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:47010504 () rs orientation: forward

Symbol	Name	Function Class
Gm568	predicted gene 568	within coordinates
Gm68750	predicted gene, 68750	356 bp upstream
Rr367622	regulatory region 367622	124 bp upstream
Tssr37147	transcription start site region 37147	734 bp upstream
Tssr41615	transcription start site region 41615	293 bp downstream
Tssr41616	transcription start site region 41616	622 bp downstream