rs49155342 SNP Detail

Summary

• ID
  rs49155342
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:24008541 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTGTT TTTTGTTTTT TGTTTTTTTA
  W
  AAAGGCTGGA CATGGTGCTG TGAAC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	JF1/MsJ	LP/J	MOLF/EiJ	NZB/BlNJ	PL/J	PWK/PhJ	SJL/J	SPRET/EiJ
ss644397294	FVB_NJ_17_23926534	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	A	A	A	A	A	A	A	A	A	A	T	A	T	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	JF1/MsJ	LP/J	MOLF/EiJ	NZB/BlNJ	PL/J	PWK/PhJ	SJL/J	SPRET/EiJ
rs49155342					SNP	T	T	T	A	A	A	A	A	A	A	A	A	A	T	A	T	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss644397294	FVB_NJ_17_23926534	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:24008541 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8694	CpG island 8694	884 bp proximal
D930048G16Rik	RIKEN cDNA D930048G16 gene	1137 bp upstream
Gm52285	predicted gene, 52285	635 bp downstream
Rr339285	regulatory region 339285	59 bp proximal
Srrm2	serine/arginine repetitive matrix 2	965 bp upstream
Tssr142954	transcription start site region 142954	1058 bp upstream
Tssr146666	transcription start site region 146666	313 bp downstream