rs49155627 SNP Detail

Summary

• ID
  rs49155627
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:23703781 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGGATCAC TGATTATTGT
  TTGAACGTCA GTAGATTTTA TACATGAATT TGGTTCTAAC AAGACAGAAC ACGTGAGATA
  TTTTTTGTAC TTTCTTTCTG AAGTAAACTT GTCAAGAATT AAAATCTAAT CCACATGCTG
  AGATCAAAAT GTATGTAAAT ATACTTCAAG TATTTTGTTA TGGACAATAT TGCGTCGTAC
  K
  CGGCCCCATG GTGTAATGGT TAGCACTCTG GACTTTGAAT CCAGCGATCC GAGTTCAAAT
  CTCGGTGGGA CCTTCTTTCC TTTTGCCGTT CTACCAGTTA CTGGATCATC TTGCTTACAT
  TTCTTCCAGT GGCTGGATCC TCCTTCTCAA TTCTGGTCTC TGCTAAGTAA GTATACGGGT
  GGTTAGAGAG TTAGCTGTTA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148805697	ENSMUSSNP6868153	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T
ss324289670	CHEV_13_23611480	CHEVERUD	SCREENING_POP	f	SNP				T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49155627					SNP	T	T	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:23703781 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5357	CpG island 5357	1322 bp distal
Gm54514	predicted gene, 54514	1361 bp downstream
Gm61424	predicted gene, 61424	within coordinates
n-TMcat6	nuclear encoded tRNA methionine 6 (anticodon CAT)	1848 bp downstream
n-TQttg4	nuclear encoded tRNA glutamine 4 (anticodon TTG)	490 bp downstream
n-TQttg5	nuclear encoded tRNA glutamine 5 (anticodon TTG)	2 bp upstream
n-TStga1	nuclear encoded tRNA serine 1 (anticodon TGA)	1384 bp downstream
Rr281116	regulatory region 281116	within coordinates
Rr281117	regulatory region 281117	1819 bp proximal
Rr403642	regulatory region 403642	1780 bp downstream
Rr403643	regulatory region 403643	1248 bp downstream
Rr403644	regulatory region 403644	384 bp downstream
Rr403645	regulatory region 403645	within coordinates