rs49155717 SNP Detail

Summary

• ID
  rs49155717
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:77041031 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCATGTATA TCCAAGTGGA
  AGAACCCGAA GGGTTATAAA ATTCCACTGG ATAAATGGCT GGCTTCTGAT GAAAGGCTTC
  ACATGAGTCA TATAAGTGAA AAATTTGACA AACTGGCTGA AGTGCTTTCC AGAGCAGCTG
  TGAGCCCACA TCAGTTTACC TCAGTTCCAG AGGGAAACTG ACGTGTGTGT GTATGATAAT
  R
  GCAGAAGAGG TTAGTGCAGC TAAGGAGGTT TGACGAGCTG AAGGAGTTGA AGCTGAGTAA
  GGAATTCCAG GACTTAGAGG AAGTGATGGA GAAGAGTATC AGAGAAGCCC TGGGCCATCA
  GGAGAGGCTG AAAGCTGAGC ATCGACACAG AGCCAAGATT CTCAAGCTAA CGCTTCCAGA
  GGCAGAGCAG CGGCAGCAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	MSM/Ms
ss144722380	ENSMUSSNP6688291	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	MSM/Ms
rs49155717					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:77041031 () rs orientation: forward

Symbol	Name	Function Class
Gm70876	predicted gene, 70876	within coordinates
Tfdp1-ps	transcription factor Dp 1, pseudogene	1476 bp upstream
Tssr7562	transcription start site region 7562	1472 bp upstream