rs49156474 SNP Detail

Summary

• ID
  rs49156474
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121710255 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGTGGAGAAC AATCACACAA AAGACAGACG GATTTTGCCC
  AGGGTTCATG ATCGTGGAGG CCTTTCTGTG CATGCTCTCC AAGAAAATCA TCAGACATTT
  M
  CCTCTGTCCT CCCGCTGTTC AGAAGCAGAT CGCCATCTTC ATCCCCACCT CTTCAATTAT
  GGATGTTCTT TGTTTTGTAC AAAATGGAAT CTGCAAAGC                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss135731770	ENSMUSSNP294767	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss320906992	CHEV_3_121619524	CHEVERUD	SCREENING_POP	f	SNP			A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs49156474					SNP	C	C	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121710255 () rs orientation: forward

Symbol	Name	Function Class
Gm34119	predicted gene, 34119	within coordinates
Rr584204	regulatory region 584204	1043 bp distal
Rr584205	regulatory region 584205	227 bp proximal