rs49156526 SNP Detail

Summary

• ID
  rs49156526
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:41357236 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAGAC ACGGGACAGC AGCTCTAACC
  T
  AACCCCAACA TGGGGCCTTG AGAGT                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss146402222	ENSMUSSNP4487280	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss325809417	CHEV_19_41443287	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs49156526					SNP	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:41357236 () rs orientation: forward

Symbol	Name	Function Class
Pik3ap1	phosphoinositide-3-kinase adaptor protein 1	Intron
Rr405959	regulatory region 405959	1035 bp downstream
Rr547616	regulatory region 547616	1776 bp distal
Rr547617	regulatory region 547617	1206 bp distal
Rr547618	regulatory region 547618	470 bp distal
Rr547619	regulatory region 547619	914 bp proximal
Tssr159304	transcription start site region 159304	1410 bp downstream
Tssr159305	transcription start site region 159305	1451 bp downstream