rs49156894 SNP Detail

Summary

• ID
  rs49156894
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:106075537 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TCTTCGTTG AATTCAGATT TTTCTGCATT
  GATAACCCTA AGGCCACGAA ATCAACCATG ATGTCTCATC TATGTCATTG TGGGCACAGA
  GACTCCACTT GGGACAACTG CTTCTTGGTG CTGCGCCCTG ACACACTTGG ACAACTTtgt
  K
  tgtgtgtgtg tgtgtgtgtg tgtgtgtACA AAGGCCAGAA GTGGCttgcc ctcctcctta
  gtttttgaga caggttggtc tcttactaaa tcagggctca ttgattcagc tagaatttct
  ggccaacaag tccgggagtc ttcctgcatc                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323183394	CHEV_9_106100669	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs49156894					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:106075537 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22254	CpG island 22254	323 bp proximal
Ppm1m	protein phosphatase 1M	within coordinates
Rr205657	regulatory region 205657	within coordinates
Tssr3004	transcription start site region 3004	862 bp upstream
Tssr91296	transcription start site region 91296	800 bp downstream
Tssr91297	transcription start site region 91297	852 bp downstream
Tssr91298	transcription start site region 91298	915 bp downstream