rs49158708 SNP Detail

Summary

• ID
  rs49158708
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:105247743 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTAGACTG TGGCCCTTGG
  CCCTCAATGT GAGGGTTGCT ACAGGCTGGG CAGGAGGGAA AAGTCTTTGG AAACACAGTA
  GGCAAAAAAT GACTTCCAAT TTATAGATGG AAGAAAAGGG GATGTTTCTG ACTCCACTGT
  CCTGTGTTCT ATCACTAGTG TTGGACCTTG TGATGTCACT AGAGGCTTGT TCTATGTATA
  Y
  AACATACACA TTTTGTCCTA TGCAAAGAAA CAATGCCTGA GACATCTCAG CTCAAATCTG
  AGACTGCGGT GTGAACTTCA GTGTGCTCAC TCTATGTACA AAGTCTTATT GCTCTTTCAA
  AAATATAACA GCGAGACTAC AAAAAAAAAT AAACTAAGAA ATTTTTCCTA TTCTTTAGCA
  CACAGATACC TTCGTGCACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss147499346	ENSMUSSNP5698502	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs49158708					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:105247743 () rs orientation: forward

Symbol	Name	Function Class
Gm66627	predicted gene, 66627	1413 bp upstream
Tmtc2	transmembrane and tetratricopeptide repeat containing 2	within coordinates