rs49158862 SNP Detail

Summary

• ID
  rs49158862
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:172892228 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGTG AGGCTCCCCC TCCCCCATTG
  T
  CACACTGTTC CCTGAAAGGT TGGAA                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss148328553	ENSMUSSNP2967285	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss320621366	CHEV_2_172875936	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs49158862					SNP	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:172892228 () rs orientation: forward

Symbol	Name	Function Class
Gm36337	predicted gene, 36337	within coordinates
Gm74627	predicted gene, 74627	within coordinates
Gm74628	predicted gene, 74628	565 bp downstream
Rr407004	regulatory region 407004	1494 bp proximal
Rr571824	regulatory region 571824	1449 bp distal
Rr571825	regulatory region 571825	175 bp distal
Rr571826	regulatory region 571826	299 bp distal
Rr571827	regulatory region 571827	113 bp proximal
Rr571828	regulatory region 571828	488 bp proximal
Rr571829	regulatory region 571829	757 bp proximal