rs49158874 SNP Detail

Summary

• ID
  rs49158874
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:139508247 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTTGGCAA AAGACTGTAA
  ATATGTTGAG GTATTCTGAA TTACAAGAAT ACTTTTTAAT CCAATGCAGT GATGTGTGTG
  TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTATTTA CAAGTGCACC
  TTGGTGGCTC CAGGATGAGA ACCCTATAAA CAGAGCACTT AACCTTGGGA CCTCTGTGAC
  Y
  TCTGTGGTGG GTAAGAGGCA GAAAGTAAAG TTGAGCACCA TGGCAAGTAC ATCATGAACA
  GTGACCATAC ATTGGTAGTT CTTTGAAACC CCAGGAAGAC AATCTGGAGA GTCTCAGCTT
  GTCAAGCAGC ACATGGAATG ACCGGAAGGG TCCTGTTCAA AGACAGTGGA AAGCCCTGCC
  CCTCCCCCTT CCATGTGTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss61086431	NES16598915	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs49158874					SNP	T	T	T	T	T	T	T	T	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61086431	NES16598915	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:139508247 () rs orientation: forward

Symbol	Name	Function Class
Rr586268	regulatory region 586268	377 bp proximal