rs49159570 SNP Detail

Summary

• ID
  rs49159570
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:74828576 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGACCCCC CTCCTTTATC
  AGCTATGACG ACGCCTCCCC CAACAGGTGG AACTTGGGAA CTTTCCTTAT AGTGTTTGTT
  GGCTCCACTG CCCAGGTTTC CATGTCACCT TGCCCTCAGT ACAGTGAATA CGTGATTGTG
  CCTGTGCCAC TTGCTGAGGA AATCCAACGT AAGGCCTGGC TGGGCGTCAC TGGTGGTCCA
  Y
  GTGGCAATGT AGCAAACCCA CTAAGCTCCT ACCAGCACTG CAGGATATGT AGGTCCTGAG
  AACGGCAACC CCCGCCCAGG TCTCCTTCTT GCTCTGAAGA GTCTAGCGAT GATCTGGTTA
  AGAAGAGTAA GTCCAAGGTG CCAAGACCTG ACCTTGGGCT TGGTGGATAG GCTGTAGGGC
  CATTGTTGAG GTTCTTTGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52365623	NES15274958	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49159570					SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52365623	NES15274958	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:74828576 () rs orientation: forward

Symbol	Name	Function Class
Gnaz	guanine nucleotide binding protein, alpha z subunit	Intron
Rr433904	regulatory region 433904	1893 bp distal
Rr433905	regulatory region 433905	1341 bp distal
Rr433906	regulatory region 433906	144 bp distal
Rsph14	radial spoke head homolog 14 (Chlamydomonas)	Intron