rs49160735 SNP Detail

Summary

• ID
  rs49160735
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:25948228 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGTTTTCAT CTAGGTTGTG
  AGAACCCAAA GCCAAGCCTC ACAGAGCTGC TGGTCCTGGA ACACGGCCTA TATGCTGGTG
  ACCCTGTGTC CAAAGTGCTG CTAAAGCCAC TTACAGGTAT GTCCAGGGCA GGAGTTCATC
  ATATAAGAAA GGACCCCGAG GTATAGGCAT TGTGGCCTGC CTGGGTCTAT ACTAGGTGTG
  Y
  GGGCAGAGCC GATAGCAAGA TCTTTGCTGG TGTTTGCATG TACCCTGGCT GTCAAGCTGA
  TCTCTCTGGC TAGATCAAGG GTCTCCCTGA CTGTGCCCTC ACGGCCCACC CCGACCAATC
  TCTTGACCTG AGTCCCAATG TCTGATTTGT AGCAAGAAAT ATAATGAATC CCATACCAAG
  GGCCTGCCCC ACCCTGCCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60255829	NES15704479	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49160735					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60255829	NES15704479	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:25948228 () rs orientation: forward

Symbol	Name	Function Class
Chtf18	CTF18, chromosome transmission fidelity factor 18	1819 bp upstream
Cpgi8774	CpG island 8774	1419 bp distal
Rpusd1	RNA pseudouridylate synthase domain containing 1	within coordinates
Rr339369	regulatory region 339369	427 bp distal
Rr405102	regulatory region 405102	1451 bp downstream
Tg(CD3E)26Cpt	transgene insertion 26, Cox Terhorst	within coordinates
Tssr143173	transcription start site region 143173	1457 bp downstream
Tssr146846	transcription start site region 146846	1891 bp upstream
Tssr146847	transcription start site region 146847	1828 bp upstream