rs49161325 SNP Detail

Summary

• ID
  rs49161325
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:96722556 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGAGGAAG ATCAGAAGTT
  TAAGGCCAGT CTAGGCTAGA GACTCTGCCT CACAACAACA ACAATAACAA CAACAACAAG
  ACATCATAGT TGGCCTGGTG TTAGATTCAT TCCTATGGCT AATCAGCCCA CACTCGCCTG
  AAGTCTCACA GCCACCAAGA GCATGTCTCT GAGAGCTGGT TGTAGCCTTT ACCCAGAGGA
  Y
  GCGATGTTCA GAGCACAACC CATCTGTTAT AATGTTGATT CTGGGCTCCC TGCTGCTACA
  GGGAGACAGT CACCTTACAG AAGACCCTAT CTGTGAGTCA GCAAACACAC TCCCTGACAT
  CATGCTAACG CACCCACTCA CCTGTATAAT GGGTACACTT CAATTAGAGT AGCCCTCCCC
  CACACGTCTT CCACAACCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60426444	NES15934960	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49161325					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60426444	NES15934960	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:96722556 () rs orientation: forward

Symbol	Name	Function Class
Cd160	CD160 antigen	Intron
Rr581395	regulatory region 581395	1061 bp distal
Rr581397	regulatory region 581397	1924 bp distal
Rr581398	regulatory region 581398	537 bp distal
Tssr34643	transcription start site region 34643	708 bp upstream