rs49161371 SNP Detail

Summary

• ID
  rs49161371
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30449218 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTCCGTCATT AAGGGATGTG GGATGCTTCT GGCTGAGTGC
  CTTTGTCATT GGAGTGTGAA CCTGGGAAAG AGAGTCACTT TGCAGAGTGG TCCAGTTAGC
  Y
  ACCTCTGCTG TCAGCTGTCA GAGTTGGGAA GGCCCATGCT CCCGGGTCCC TGGTTCTGGA
  ATGTTTGGTT CTGGGTGTGG CTATTGCTTC TTTGAGGGG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60990290	NES16139105	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	T	C	C		C	C	T	T		C
ss322136399	CHEV_7_31534812	CHEVERUD	SCREENING_POP	f	SNP											C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs49161371					SNP	C	C	C	C	C	C	T	T	C	C	C	C	C	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60990290	NES16139105	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30449218 () rs orientation: forward

Symbol	Name	Function Class
Sbsn	suprabasin	1678 bp upstream
Tmem147os	transmembrane protein 147, opposite strand	within coordinates
Tssr65808	transcription start site region 65808	1733 bp upstream