rs49162279 SNP Detail

Summary

• ID
  rs49162279
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:24792122 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTACCTGTCT TGTAAATTTC
  TTCTGTGATG TAGAGACCTT CTCTGTAAGA TAGGCCTCCC AGAACCGGGG TGCCGGTCGC
  CGGGGTGAAT GCTGGGTCCA GCCCGTCGAC ATCAAAGCTC AGGTGAATCG GCCTTTTCTT
  CCTGTTAGGA AACAGGAGGG GCTTTCAGCT TAAAGTGGTT TAGGAGTCAG TAATCAAATG
  M
  AGGTCTGACC CTGCATTATA AAAGCATCAC ATGGAGATCC ATGGTTTTAC CTAAATTTTA
  TTAGCAGCCT GCGCTGACAG GAATGTCAGG AGGAAACCTT AGTCATGAAC TCGCACACAA
  AGCATCGTAC CTTCCCAGCA GGTAGCTGAA GGTCTCTTCC ATCACCTTGC CAATCCCCAG
  CTTGTCTACT TCAGTCATGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	CAST/EiJ	DBA/2J	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss61262546	NES16880318	PERLEGEN	MM_PANEL2	f	SNP	C	A	C	A	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	CAST/EiJ	DBA/2J	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs49162279					SNP	C	A	C	A	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61262546	NES16880318	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:24792122 () rs orientation: forward

Symbol	Name	Function Class
Arg1	arginase, liver	Intron
Tssr92746	transcription start site region 92746	587 bp downstream
Tssr92747	transcription start site region 92747	497 bp downstream
Tssr97085	transcription start site region 97085	731 bp upstream
Tssr97086	transcription start site region 97086	669 bp upstream
Tssr97087	transcription start site region 97087	643 bp upstream
Tssr97088	transcription start site region 97088	583 bp upstream
Tssr97089	transcription start site region 97089	568 bp upstream
Tssr97090	transcription start site region 97090	537 bp upstream
Tssr97091	transcription start site region 97091	142 bp upstream
Tssr97092	transcription start site region 97092	123 bp upstream
Tssr97093	transcription start site region 97093	96 bp upstream
Tssr97094	transcription start site region 97094	85 bp upstream
Tssr97095	transcription start site region 97095	68 bp upstream
Tssr97096	transcription start site region 97096	186 bp downstream
Tssr97097	transcription start site region 97097	460 bp downstream
Tssr97098	transcription start site region 97098	608 bp downstream
Tssr97099	transcription start site region 97099	1723 bp downstream
Tssr97100	transcription start site region 97100	1761 bp downstream