rs49163370 SNP Detail

Summary

• ID
  rs49163370
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:108887995 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCAG GGTCTGTGAG CCCATGCTGA
  G
  CCTGGGGAGG AGATGGGGTA ATGAG                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss136953545	ENSMUSSNP2285249	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G
ss323192974	CHEV_9_108961441	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49163370					SNP	G	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:108887995 () rs orientation: forward

Symbol	Name	Function Class
Atrip	ATR interacting protein	820 bp downstream
Gm53191	predicted gene, 53191	within coordinates
Rr401693	regulatory region 401693	692 bp upstream
Rr686956	regulatory region 686956	1062 bp distal
Rr686957	regulatory region 686957	314 bp proximal
Rr686958	regulatory region 686958	735 bp proximal
Rr686959	regulatory region 686959	881 bp proximal
Shisa5	shisa family member 5	1150 bp downstream
Trex1	three prime repair exonuclease 1	within coordinates
Tssr87219	transcription start site region 87219	1974 bp downstream
Tssr87220	transcription start site region 87220	1886 bp downstream
Tssr87221	transcription start site region 87221	1667 bp downstream
Tssr87222	transcription start site region 87222	1618 bp downstream
Tssr91571	transcription start site region 91571	1204 bp upstream
Tssr91572	transcription start site region 91572	656 bp upstream
Tssr91573	transcription start site region 91573	522 bp upstream
Tssr91574	transcription start site region 91574	289 bp upstream
Tssr91575	transcription start site region 91575	242 bp upstream
Tssr91576	transcription start site region 91576	156 bp upstream
Tssr91577	transcription start site region 91577	289 bp downstream
Tssr91578	transcription start site region 91578	749 bp downstream
Tssr91579	transcription start site region 91579	784 bp downstream