rs49164479 SNP Detail

Summary

• ID
  rs49164479
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:45864979 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGCAACAG CAGGGATATG
  CAGCGGAGAC CTTAGAAGGT TCCAGGATAG CCCACATGCA CACACATGTT ATAGACACGT
  GTCTACACAC GTCCCTGTGC ACACACTGTC ACGGGAGATC AAGACGTGCC CTCAAGCCCT
  CAATCTTCTT CCTCATGAAC TAGGAAAGCA GCAAGAAGCT CCGGTTCCAC TGCTACTCTG
  S
  AGGCCAGAGC CCTGCAGGGA GGGGTGTAGG GAACTGTGTC GAAATACAAG TTGTCTCTCT
  AGTTCTGACC ATGGGCCAAG CTCTGAAGTG ACTTTCCATC TGAACCTTGA TTCACCCTCT
  CTAAGAAAAT AAAGAAATAA CCCACCCTCT CTGCTGCGGA CAAAGCTACA CAGGACAGTG
  GGCGTTTAAA AGTGAAGAAA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss136420921	ENSMUSSNP7193065	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49164479					SNP	C	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45864979 () rs orientation: forward

Symbol	Name	Function Class
A830035O19Rik	RIKEN cDNA A830035O19 gene	420 bp upstream
Cpgi21698	CpG island 21698	752 bp proximal
Rr678012	regulatory region 678012	within coordinates
Rr678013	regulatory region 678013	1286 bp proximal
Sidt2	SID1 transmembrane family, member 2	within coordinates
Tssr84819	transcription start site region 84819	1646 bp upstream
Tssr89292	transcription start site region 89292	797 bp upstream
Tssr89293	transcription start site region 89293	within coordinates
Tssr89294	transcription start site region 89294	1285 bp downstream
Tssr89295	transcription start site region 89295	1489 bp downstream
Tssr89296	transcription start site region 89296	1515 bp downstream
Tssr89297	transcription start site region 89297	1545 bp downstream
Tssr89298	transcription start site region 89298	1572 bp downstream
Tssr89299	transcription start site region 89299	1598 bp downstream